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To get around this, I disabled agent-to-server communication under the policy for the machines that have drive protection to prevent them from calling in while they are locked down.
I then scheduled an Agent Wakeup task to occur when the machines are unlocked. I have these machines set up to unlock prior to opening for business to allow for patching and et cetera. Had to settle for once a day agent communication on these boxes.
Not ideal, but the easiest solution I've found so far.