You need 3 things, a compliance query, server task, and automatic response
Menu > Reporting > Queries and Reports
New Query, give it a meaningful name, Next
For results type, select System Management > Managed Systems, Next
Select Boolean Pie-Chart for displaying the results
Select configure criteria, and set your compliance data. Keep this simple, and dont do any client filtering at this point. Next
Select Columns you wish to display for clients in the report, Next
Choose required filters for the results (if any), for example clients with a particular tag, or device type which you dont want including in the report.
Save the Query
Menu > Automation > Server Tasks
New Task, and name accordingly, Next
Actions: Run Query (select your query)
Sub-Actions: Generate Compliance Event. Set the results as either a percentage of clients or specific number.
Set your server task schedule, and save the query
Menu > Automation > Automatic Responses
Create new or duplicate the default "Non-Compliant Computer Detected" response
You want the response to capture event ID 16000, and configure the aggregation settings to how you want them.
Finally, the actions section. You need to specify here which action you would like to take. Probably the most common choice would be to send an email to the administrator to alert.
Thats it. As long as you keep all the criteria the same as on your 3.6 box then it should be straight foward, as you should already know which boundaries and filtering have already been set.