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as far as I can tell, there is no problem emerging out of this behaviour. The only problem we were confronted with were 4 Notebooks out of 350 which crashed after the update (creating a new PBFS did the trick well) but there is no coherence to the mentioned question of yours.
What ePO and agent version do you use? This random installation order should not be seen anymore in ePO 4.6 and Agent 4.6.
Create just one task and add both installs into the one task - Make sure the agent install appears first in the list then click the + button to add the install for EEPC. That way it will deploy the agent first and then EEPC.