I believe you could just go to 'Menu >> Configuration >> Agent Handlers' then click on 'Agent Handlers' under the 'Handler Status' on the top left. The next screen should have a delete option under 'Actions' for any non-primary handlers.
Thanks for your repsonse. but i do not get the delete option. I get only edit option in Actions.
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I'd open a case with Support - this will probably need to be done by editing the database directly.
I'd agree with Joe - I've seen this in my lab before and it may be that the agent handlers have the primary flag set to true. If you want to check run this query in sql mgmt studio and check the 'Primary' field - I believe there should only be one set to on (1):
select computername, "Primary" from eporegisteredapacheservers
You can also just run this to see all the data in that table concerning them:
select * from eporegisteredapacheservers
In any event, you should probably open a call with McAfee to get their help/blessing to change that field if it's indeed the issue.