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I haven't noticed any activity when starting up myself. I guess it all depends on what applications are installed as part of SecurityCenter and what setup one has. For instance people have complained of high activity at startup only to solve it by storing emails in a folder other than Inbox...AntiSpam was scanning at startup.
As I also stated there Technical Support is linked at top left of this page and is best approached using the Chat client. I regret that their email responses are sadly lacking, something else we have complained about.
Apparently your request may be partly solved with the advent of the new 2010 products.
The beta has this (shut down after scan) for full and custom and quick ONLY if nothing found
But you still can't schedule the update to occur just before.
They are in beta testing right now but it shouldn't be long before they are released and will appear as an update requiring a reboot.
**I have yet to verify that this is a fact.