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Look at the document that talks about upgrading from 4.2 to 5.x. Its pretty much the same process. Basically what you are gonna do is to take all services offline, copy the entire sbadmin folder to a safe location, install the program over the top selecting only the components you want to install. Once you have done this go to the tab and container that has all your filesets and right click. There is an option to update the filesets and all the new v519 ones will be in their. Import them in, start your services back up and associate the fileset with those you want to upgrade.
There is a checklist in the upgrade guide about doing this. just a note there is a glitch in the v5.1.9 where they report as 5.1.8 since technically they are the same according to what I have heard. you can edit an ini file to state v5.1.9 instead of v5.1.8 before you install to make this easier.
I've only just had a chance to try this in our test enviroment and the process is as you described and actually very simple. I'm planning on doing this on our live server tomorrow so fingers crossed!!!