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You dont have an inactive agent task setup for 1 or 2 days do you?
It could be because all your machines go offline at the weekend and dont contact the ePO server, then the epo server deletes them.
Try looking at your tasks in automation.
The compliance summary can be costomized to show only computers having connected to ePO server on the last X days, perhaps you have changed it to 2 days and so after a weekend they don't appear anymore...?