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Repositories Not updating

Hi Guys,

We have been having a problem over the past few weeks where our repositories are randomly not updating. The errors we get are:

The semaphore timeout has expired,
The specified network name no longer exists,
The process cannot access the file because it's already being used by another process.

We have 8 repositories and out of them 2 update all the time no problems and the others will randomly fail with the above errors. I have changed the times the updates run, have deleted the repositories, recreated the master repository and re-installed the Symantec backup agent.

Running 2003 sp2 on all servers,
EPO 3.6.1.

Any ideas?