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Failed to update distributed repository

I've newly configured the epo 4.0 server and i am failing to update the distributed repository. I'm getting the following error.

Replicate to site ePOSA SYSTEM NAME in progress (65%), no warnings
Replication failed to 1 or more repositories.

Every time it will reach 50-70 % and finally fails without any warnings. But, i could able to see files have been created for replication of distributed repository.

My existing setup is as follows

ePO server is located in remote site.
I've created the super agent repository in site where i am located.
Site to site VPN is configured between the sites.